Common version control questions and workarounds

Git clone or push fails: error setting certificate file ca-bundle.crt Bitbucket Git authentication: Use API token with scopes instead of password Cannot rename shelf: Enter key does not confirm new name Git Changes panel blank: Project root missing from Directory Mappings Git fails in WSL project on Windows: "detected dubious ownership in repository" WSL projects: Git remote operations fail with "Exec format error" Git Log: Dates and times do not reflect OS format settings until restart Git log history graph: How to use the visualization in the Log tool window Committing selected chunks commits the entire file: Git hook conflict Interactive Git operations fail in WSL: Exec format error on java.exe Run git hooks option missing in Commit settings: core.hooksPath overrides hook location Unversioned Files lists nonexistent files on Linux/macOS: "Cannot show diff: file not found" GitHub integration: Cannot add a second personal access token for the same GitHub user Annotate with Git Blame: Unavailable for third-party dependencies Commit tool window Group By options not preserved after IDE settings import Modal Commit dialog: Ctrl+Z opens Rollback instead of undoing message text Git diff: Show Diff vs Show Diff in a New Tab Keyboard shortcut does not work on macOS: System-wide hotkey captured by third-party application Branches popup: Shift+Insert does not paste into search field without explicit focus Cannot expand Subversion repository tree over SSH: Missing host fingerprint in known_hosts Cannot create signed Git commits from IDE: error: cannot run gpg: No such file or directory Partial commit includes whole file instead of selected hunks: Caused by active Git hook How to disable Recent branches in the Branches widget Nested git repository files appear in Unversioned Files: Parent project .gitignore is not applied Cannot clone Bitbucket repository: Use API token with scopes for authentication Git Worktrees do not work in my project Changes not showing in Commit tool window: project path includes an ignored folder name No toggle beside 'Unversioned Files' in Rider when there are many files Commit and Push button missing in the Commit tool window Commit tool window: how to perform git add . (dot)